@Cheryl271 No. Your cleaning fee is still added on top of your nightly price.
Wheelhouse sets your price, but is not aware of your cleaning fee.
However, as it runs it observes how well your place is booking up, and adjusts the price accordingly. I would imagine that means your cleaning fee would have an affect on your Wheelhouse price indirectly.
Over time, the goal is simple: to set your price dynamically so that you receive as much money as possible. If the price is too high, people will not book, and Wheelhouse will lower the price. If Wheelhouse feels people are booking too fast, Wheelhouse will raise your price.
(And, of course, it tries to take into account any special events and seasonality it knows about.)